Example datasets and analyses

• aceex.in ACE levels and ACE indel
• aldh2.in ALDH2 genotype and alcoholism
• alopeciaex.in Congenital alopecia universalis
• ataxiaex.in Episodic Ataxia/Myokymia
• BEPS.in British Electoral Panel Study
• blau.in Blau family syndrome
• boricex.in Boric acid teratogeneticity
• cars.in Plot lowess fit of stopping distance versus speed
• cavanaughex.in Crohn's Disease and chromosome 16
• cf.in Classical segregation analysis of cystic fibrosis
• codis6.in Microsatellites in six populations
• contra.in Contraceptive use in Bangladesh
• dalmation.in Blue eyes and deafness in dogs
• ellipto5ex.in Elliptocytosis
• eyes.in Diabetic retinopathy photocoagulation trial
• feigl.in AML survival
• filliben.in Using the Filliben correlation
• frenchad.in APOE, age and dementia
• foxman.in Logistic regression
• fst.in Multilocus Fst
• grouseticks.in Poisson GLMM
• hanley.in SES, family and height
• histio.in Faisalabad Histiocytosis
• hla7.in HLA in seven populations
• hlp3.in Hyperlipidemia
• infertcc.in Conditional logistic regression
• jensen.in Hard pedigrees for Gibbs sampling
• jicaque.in An inbred pedigree
• kidney.in Weibull frailty analysis
• laprise.in Atopy and MS4A2
• linclex.in Lipofuscinosis
• liuex.in Alzheimers and APOE
• longqtex.in Homozygosity mapping
• macros.in Example macros calling MENDEL etc
• melaexpression.in A small eQTL GWAS dataset
• melaexpression.bin.gzThe actual eQTL data
• mito8.in Mitochondrial SNPs in four HapMap populations
• morm.in MORM syndrome in an inbred pedigree
• morrell.in Waardenberg syndrome, MITF and TYR
• mooser.in Lp(a) and Apo(a)
• mps.in Multiple pterygium syndrome
• nancycats.in Population genetics of stray cats
• neff1999.in Dog marker mapping data
• orthodont.in Growth curve
• presenilin2.in PSEN2 and Alzheimers in Volga Germans
• ratsurv.in Survival analysis
• retinopathy.in Multivariate survival analysis (Weibull GLMM)
• ships.in McCullagh and Nelder 1989 example Poisson GLMM
• sieve.in Sieve of Eratosthenes (in Scheme)
• sle.in Lupus and 11q14
• skorecki.in Y haplotypes in Jewish priests
• sunset.in Sunrise and sunset times (in Scheme)
• thc2.in Inherited thrombocytopenia and 10p
• thomas.in Hemochromatosis and 6p
• titanic.in Survival after shipwreck (log-linear models)
• twinaceex.in Serum ACE in twins
• twodist.in Mixture of normals
• usher1c.in Usher syndrome in Acadians
• volgaex.in Alzheimers in Volga Germans
• williamsex.in Hypercholesterolemia
• zieve.in Atopy and blood group (Zieve et al 1937)

Extending Sib-pair using macros and Scheme

• plot.scm Scheme functions calling EGGX for 2D plots (see cars.in above)
• macros.in Assorted macros
• scheme.in Assorted Scheme functions
• getNCBIsnp.in Grab SNP information (requires wget)
• gnuplot.in Plot data using gnuplot (requires gnuplot)
• ack.in A Scheme mini-benchmark
• cal.in The Unix cal command
• where.in Select a subset of data for analysis eg "where (male) assoc trait"
• multinomial.in Multinomial association analysis with covariates

Regression testing

• testsuite.in Run program through paces

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